SNP View for TcSNP|snp|4028226

Summary information for this SNP

Containing assembly (Assembly ID): aln.430809
Alignment depth (number of contained sequences): 3
SNP Score (Probablility): 0.74
SNP Type: synonymous
SNP Codon Position (1-3): 3
SNP Assembly Position: 343
SNP Reference Genome Contig Location:
Contig: AAHK01001267 (RefSeq NW_919987); Location: 6118
Contig: AAHK01008758 (RefSeq NW_912495); Location: 393
Major allele: C (frequency: 0.67)

Number of alleles: 2
[Allele 1]
  Character: C
  Present in: 2 sequences
  Present in these strains: Tulahuen CL Brener
  Present in codon CGC: coding for aminoacid Arg
[Allele 2]
  Character: T
  Present in: 1 sequence
  Present in this strain: CL Brener
  Present in codon CGT: coding for aminoacid Arg


Sequence Context:

                    C
CATGTAAGATACTGGACTCG TTTCGTTTCGGACCTGAATC
                    T

Note: only one SNP is shown in this representation. Other polymorphic sites in the flanking sequence (if any) are not shown. You can also view this SNP in context with other SNPs in a small slice of the original alignment, centered around this SNP.