SNP View for TcSNP|snp|4028205

Summary information for this SNP

Containing assembly (Assembly ID): aln.430809
Alignment depth (number of contained sequences): 3
SNP Score (Probablility): 0.74
SNP Type: non_synonymous
SNP Codon Position (1-3): 2
SNP Assembly Position: 83
SNP Reference Genome Contig Location:
Contig: AAHK01001267 (RefSeq NW_919987); Location: 5859
Contig: AAHK01008758 (RefSeq NW_912495); Location: 652
Major allele: A (frequency: 0.67)

Number of alleles: 2
[Allele 1]
  Character: A
  Present in: 2 sequences
  Present in these strains: Tulahuen CL Brener
  Present in codon CAG: coding for aminoacid Gln
[Allele 2]
  Character: G
  Present in: 1 sequence
  Present in this strain: CL Brener
  Present in codon CGG: coding for aminoacid Arg


Sequence Context:

                    A
CGGCGGAGGGAGTCGCCTGC GAGGCAAAGTCGCTGTGCGG
                    G

Note: only one SNP is shown in this representation. Other polymorphic sites in the flanking sequence (if any) are not shown. You can also view this SNP in context with other SNPs in a small slice of the original alignment, centered around this SNP.