SNP View for TcSNP|snp|4028193

Summary information for this SNP

Containing assembly (Assembly ID): aln.430809
Alignment depth (number of contained sequences): 3
SNP Score (Probablility): 0.22
SNP Type: non_synonymous
SNP Codon Position (1-3): 3
SNP Assembly Position: 12
SNP Reference Genome Contig Location:
Contig: AAHK01001267 (RefSeq NW_919987); Location: 5788
Contig: AAHK01008758 (RefSeq NW_912495); Location: 723
Major allele: C (frequency: 0.67)

Number of alleles: 2
[Allele 1]
  Character: C
  Present in: 2 sequences
  Present in this strain: CL Brener
  Present in codon TGC: coding for aminoacid Cys
[Allele 2]
  Character: A
  Present in: 1 sequence
  Present in this strain: Tulahuen
  Present in codon GCA: coding for aminoacid Ala


Sequence Context:

           A
ATGGAAGTGTG GTGCCACCTTGGGCACACGG
           C

Note: only one SNP is shown in this representation. Other polymorphic sites in the flanking sequence (if any) are not shown. You can also view this SNP in context with other SNPs in a small slice of the original alignment, centered around this SNP.