TcSNP alignment 438249

Summary information:

Number of Contained Sequences: 3 | Consensus Length: 3411 bp | Assembly Consistency: 100
Assembly notes:

SNPs found: 139
Synonymous: 54   |   Non-synonymous:: 67   |   Nonsense: 0
dS: 0.0428246   |   dN: 0.0282484   |   dN/dS: 0.659631

Sequences in this alignment:
XM_814229   Cl Brener Non-Esmeraldo-like allele   Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.10470535 ...
XM_808591   Cl Brener Esmeraldo-like allele   Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.10470535 ...
Adriana_474863   Adriana   Mapped to Tc00.1047053511907.190 (Non_Esmeraldo-like):hypothetical pro ...

Reference sequences:
Tc00.1047053511907.190  –  Find this gene also at TriTrypDB | GeneDB | TDR Targets | OrthoMCL  –  Search TcSNP for divergent copies of this gene.
Tc00.1047053506801.70  –  Find this gene also at TriTrypDB | GeneDB | TDR Targets | OrthoMCL  –  Search TcSNP for divergent copies of this gene.

Additional information (BLAST).

 

Alignment overview

graphic overview of the alignment

Download/View alignment in ClustalW format (text/plain)

 

Alignment display controls

Only paint SNPs that have a score greater than:   [ Valid range: 0-1 ]
Display alignment from base:    to  [ Valid range: 1-3411 ]

 

 

Alignment

Alignment legend: polymorphic sites in the alignment have been decorated using different colors and/or font styles to show different properties of each site.

Property Score Synonymous Nonsynonymous Nonsense Not analyzed
Style used Background color Black White Bold, Underline Italics
Example: 0 score color key 1   A       G     A       G     A       G     A     G  

  NOTE: reference CDSs are shown in UPPERCASE

                        1|__________________________________________________________|60
XM_814229                ATGCGTGACGGCACTGTTGGGGCTGCTCATGAAATATGGACGAGTACAGTTGACATGCTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                ATGCGTGACAGCACTGTTGGGGCTGCTCATGAAATATGGACAAGTACAGTTGACATGCTG    Cl Brener Esmeraldo-like allele

                       61|__________________________________________________________|120
XM_814229                GTGTCAGAGAGGAGCAGTCTGCAGCTGATTGTGGACACACTGCATGCCACACTCGACTAC    Cl Brener Non-Esmeraldo-like allele
XM_808591                GCGGAAGAGAGGAGCAGTCTGCAGCTGATTGTGGACACACTGCATGCCACACTCGACTAT    Cl Brener Esmeraldo-like allele

                      121|__________________________________________________________|180
XM_814229                CACCAAGTTGGAAGGGGTCCCGCGAACTACAACA------ACAACGACAGTCACAGTTTA    Cl Brener Non-Esmeraldo-like allele
XM_808591                CACCAAGTTGGAAGGGGTCTTGCGAACAACAACAACAACGACAACGACAGTCACAGTTTA    Cl Brener Esmeraldo-like allele

                      181|__________________________________________________________|240
XM_814229                CTCCGTAATGGTGATGGAAATGTGTTTGCCTCTGAGGAGGAAGTGGTCGAACTGCTCGGC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTCCGTAGTGGTGATGGAAATGTGTTTGCCTCAGAGGAGGAAGTGGTCGAACTGCTCGGC    Cl Brener Esmeraldo-like allele

                      241|__________________________________________________________|300
XM_814229                ATGCTGCCTCAAGTTCTTCGTAGTGCTGCCGACCCGGCCATTCTGCAGCTGAAGGAGCGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                ATGCTGCCTCAAATTCTTCGTAGGGCTGCCGACCCAGCCATTCTGCAGCTGAAGGAGCGG    Cl Brener Esmeraldo-like allele

                      301|__________________________________________________________|360
XM_814229                CAACGGCAGTCCATGACTATTGCTGGCGTTGCACGTCCACCTCCGTTGTCGCGTCACGCC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CAACGACAGTCCATGACTATTGCTGGCGTTGCACGTCCACCTCCGTTGTCGCGTCACACC    Cl Brener Esmeraldo-like allele

                      361|__________________________________________________________|420
XM_814229                ACATTATATCGTCTTATGTTTGCTCAGGCCGAATCGTCCTTATCTTCGTCCATTGGCTCT    Cl Brener Non-Esmeraldo-like allele
XM_808591                ACATTATATCGTCTTATGTTTGCTCAGGCCGAATCGTCCTTATCGTCGTCCATTTGCCCT    Cl Brener Esmeraldo-like allele

                      421|__________________________________________________________|480
XM_814229                GGGGAGTGTGGTGTGCTAGACTGCATTGCACGTGTGCTCATAAGCGGAGTTGGTACAAGC    Cl Brener Non-Esmeraldo-like allele
XM_808591                GGGGAGTGTGGTGTGCTAGACTGCATTGCACGTGTGCTCATAGGCGGAGTTGGTACAAGC    Cl Brener Esmeraldo-like allele

                      481|__________________________________________________________|540
XM_814229                GGCATGAGTTCATCCGGGATGCTTTCAGGAAAGCCTCGCCAGGTGTTTGTTACTGCTAAT    Cl Brener Non-Esmeraldo-like allele
XM_808591                GGCATGAGTTCATCCGGGATGCTTTCAGGGGAGCCTCGCCAGGTGTTTGTTACTGCTAAT    Cl Brener Esmeraldo-like allele

                      541|__________________________________________________________|600
XM_814229                AGAGAAAAGTCGTGGTTTACAGGAAATGTCACAATTGCAGCGCTTCGTTCGCTTGGTGAG    Cl Brener Non-Esmeraldo-like allele
XM_808591                AGAGAAAAGACGTGGTTTACAGGAAATGTCACAGTTGCTGCGCTTCGTTCGCTTGGCGAG    Cl Brener Esmeraldo-like allele

                      601|__________________________________________________________|660
XM_814229                ATTGTTGAATTGTGTCTTCACGACACTGGAGAAGAGACACACGTTGGCGGAAGCATTTCC    Cl Brener Non-Esmeraldo-like allele
XM_808591                ATTGTTGAATTGTGTCTTCACGACACTGGAGAAGAGACACGCGTTGGCGGAAGCATTTCC    Cl Brener Esmeraldo-like allele

                      661|__________________________________________________________|720
XM_814229                AGTGCATACTCTGGTCGCCGTATGACGTTGTTGGGCGGCGAAGATACGGTAGAGAAGTAC    Cl Brener Non-Esmeraldo-like allele
XM_808591                AGTGCACACTCTGGTCGCTGCATGACGTTGCTGGACGGCGAAGATACGGTAGAGACGTAC    Cl Brener Esmeraldo-like allele

                      721|__________________________________________________________|780
XM_814229                AAATTGCTGCTAGACGCACTCGGGAAATCATTGTGCCAAACCGGCCTTTTTGACCATCTC    Cl Brener Non-Esmeraldo-like allele
XM_808591                AAATTGCTGCTAGACGCACTCGGTCAATCATTGTGCCAAACCGGCCTTTTTGACCATCTC    Cl Brener Esmeraldo-like allele

                      781|__________________________________________________________|840
XM_814229                TGGCACGCCCTTTTGTTTCACCCCGTCATGAATACGCAGCGTATAGCGATTGTGCGGGTA    Cl Brener Non-Esmeraldo-like allele
XM_808591                TGGCACGCCCTGTTGTTTCATCCCGTCATGAATACGCAGCGTATAGCGATTGTGCGGGTA    Cl Brener Esmeraldo-like allele

                      841|__________________________________________________________|900
XM_814229                CTTTGCGACGTAAGCCGCGTTGATCTTTTGCGGCTTCCAGTTGTTATTAAAAGAACGCGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTTTGCGACGTGAGCCGCGTTGATCTTTTGCGGCTTCCAGTTGTTATTAAAAGAACGCGG    Cl Brener Esmeraldo-like allele

                      901|__________________________________________________________|960
XM_814229                CATATGATGACCCCTGCTGTGTGGGGTGAGCGGGTCTCAGAATGTATTCTCTCCGATCCC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CATATGATGACCCCTGCTGTGTGGGGTGAGCGGGTCTCAGAATGTATTCTCTCCGATCCC    Cl Brener Esmeraldo-like allele

                      961|__________________________________________________________|1020
XM_814229                ACCGCAATGGTGAAGGAATCTATTGCCGTAATGCTCTATGAAGGACTACAGTCCGTGCTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                ACTGCAATGGTGAAGGAATCTATTGCCGTAATGCTCTATGAAGGACTACAGTCCGTGCTG    Cl Brener Esmeraldo-like allele

                     1021|__________________________________________________________|1080
XM_814229                GGGGCTGACCGTCGCGGTGACGACTATGATGATCATGTCTACTGGAGGCGTTGGCTGACA    Cl Brener Non-Esmeraldo-like allele
XM_808591                GGGGCTGACCGTCGCGGTGACGACGACGTTGATCATGTCTACTGGAGACGGTGGCTGACA    Cl Brener Esmeraldo-like allele

                     1081|__________________________________________________________|1140
XM_814229                AACCGCTCGTTACGATTTCTCCTGGGTGTTTTGGCAACAGGGGCCTCTCTTGCGGTGCTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                AACCGCTCGTTACGATTTCTGCTGGGTGTTTTGGCAACAGGGGCCTCTCTTGCGGTGCTG    Cl Brener Esmeraldo-like allele
Adriana_474863           ---------------------------------------------tctcttgcggtgctg    Adriana

                     1141|__________________________________________________________|1200
XM_814229                CAGCCAGTGCTGGGTTCCTTGTTTTTAGTTCTGGAACAAGACCTGTGGGAGGGTGCAACA    Cl Brener Non-Esmeraldo-like allele
XM_808591                CAGCCAGTGCTGGGTTCCTTGTTTTTGGTTCTGGAACAAGACCTGTGGGAGGGTGCAACA    Cl Brener Esmeraldo-like allele
Adriana_474863           cagccagtgctgggttcc-tgtttttagttctggaacaagacctgt-ggagggtgcaaca    Adriana

                     1201|__________________________________________________________|1260
XM_814229                CGACAGTTTCGATCAGGAAGATCTGTGGCGGAGCGTATTGACGTAACATCAATTGTGGAG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CGACAGCGTCGATCAGGAAGATCTGTGACGGAGCGTATTGACGTAACATTAATTGTGGAG    Cl Brener Esmeraldo-like allele
Adriana_474863           cgacagcgtcgatcaggaagatctgtgacggagcgtattgacgtaacatcaattgtggag    Adriana

                     1261|__________________________________________________________|1320
XM_814229                GTGTGTGCCACGGTACTGGTGCATCTTTTTACCGGTCCAGCCGCCGTGAACGGACGAAGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                GTGTGTGCCACGGTCATGGTGCATCTTTTTACCGGTCCAGCCGCCGTGAACGGACGAAGG    Cl Brener Esmeraldo-like allele
Adriana_474863           gtgtgtgccacggtcctggtgcatctttttaccggtccagccgctgtgaacgaacgaagg    Adriana

                     1321|__________________________________________________________|1380
XM_814229                TTTGACGATGATGGGGATAAGCAGTTGAAAAGGTATCGTTTTCTCGTTCGAGGTGCGGTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                TTTGACGATGATGGGGATGAGCAGTTGAAAAGATATCGTCTTCTCGTTCGAGGTGCGGTG    Cl Brener Esmeraldo-like allele
Adriana_474863           tttgacgatgatggggataagcagttgaaaagatatcgttttctcgttcgaggtgcggtg    Adriana

                     1381|__________________________________________________________|1440
XM_814229                CGGTTGCTCCGCCTCGCGTTGAAAAGAGTTGATCAACTGTTGGGCAGCCCAAACATAGTT    Cl Brener Non-Esmeraldo-like allele
XM_808591                CGGTTGCTCCGCCTCGCGTTGAAAAGAGTTGATCAACTGCTGGGCAGCCCAAACATAGTT    Cl Brener Esmeraldo-like allele
Adriana_474863           cggttgctccgcctcgcgttgaaaaaagttgatcaactgctgggcagcccaaacatagtt    Adriana

                     1441|__________________________________________________________|1500
XM_814229                CAGCAGCCGAAGGGCGGCGGTGATGCTGAGAAAGAGGCTTGTGCGCTTTTGAGTGCGTGC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CAGCAGCCGAAGGGCGGCGGTGATGCCGAGAAAGAGGCTTGTGCGCTGTTGAGTGCGTGC    Cl Brener Esmeraldo-like allele
Adriana_474863           cagcagccgaagggcggcggtgatgccgagaaagaggcttgtgcgctgttgagtgcgtgc    Adriana

                     1501|__________________________________________________________|1560
XM_814229                GTGGAGAAACAAGTGCTGGCCGCCGTAATGAAGTGCTTGGAGATGTCGCCGGATGGGTCC    Cl Brener Non-Esmeraldo-like allele
XM_808591                GTGGAGAAACAAGTGATGGCCGCCGTAATGAAGTGCTTGGAGATGTCGCCGGATGGATCC    Cl Brener Esmeraldo-like allele
Adriana_474863           gtggagaaacaagtactggccgccgtaatgaagtgcttggagatgtcgccggatgggtcc    Adriana

                     1561|__________________________________________________________|1620
XM_814229                AGCATGTGTTCCTTCGTGACAAGGTCGATGCGGGCGGAGATGGTGCGGTTCGTACGTGAC    Cl Brener Non-Esmeraldo-like allele
XM_808591                AGCATGTGTTCCTTCGTGACAAGGTCGATGCGGGCGGAGATGGTGCGGTTCGTACGTGAC    Cl Brener Esmeraldo-like allele
Adriana_474863           agcatgtgttccttcgtgacaaggtcgatgcgggcggagatggtgcggttcgtacgtgac    Adriana

                     1621|__________________________________________________________|1680
XM_814229                CTGCTCGAGCGAGCCTCCCCGCCACTGTTCTTCTTGACGTGCAAGCTGGTGCCTTACTTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTGCTCGAGCGAGCCTCCCCGCCACTGTTCTTCTTGACGTGCAAGCTGGTGCCTTACTTG    Cl Brener Esmeraldo-like allele
Adriana_474863           ctgctcgagcgagcctccccgccactgttcttcttgacgtgcaagctggtgccttacttg    Adriana

                     1681|__________________________________________________________|1740
XM_814229                CCAACGATGCTGCAGATAATTTTAGATGCAAGAGAGGAGGGCGTCTTGGATGACCGTGAC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CCAACGATGCTGCAGATAATTTTAGATGCAAGAGAGGAGGACATCTTGGATGACCGTGAC    Cl Brener Esmeraldo-like allele
Adriana_474863           ccaacgatgctgcagataattttagatgcaagagaggagggcgtcttggatgaccgtgac    Adriana

                     1741|__________________________________________________________|1800
XM_814229                TGTTGCAACGCCGATGGCGGCAGCGATGCGCTTCCCTCTTCCCAGCTGTACGTGGAGGCG    Cl Brener Non-Esmeraldo-like allele
XM_808591                TGTTGCAACGCCGATGGCGGCAGCGATGCGCTTCCTTCTTCCCAGCTGTACGTGGAGGCG    Cl Brener Esmeraldo-like allele
Adriana_474863           tgttgcaacgccgatggcggcagcgatgcgcttccctcttcccaactgtacgtggaggcg    Adriana

                     1801|__________________________________________________________|1860
XM_814229                TTGTGTAGTGATGGGGTAGAAATGATCTCTCTTCTCGGCATGATGTTGTGGTTCTCGCCG    Cl Brener Non-Esmeraldo-like allele
XM_808591                TTGTGTAGTGATGGGGTCGAAATGATCTCTCTTCTCGGCATGATGTTGTGGTACTCGCCG    Cl Brener Esmeraldo-like allele
Adriana_474863           ttgtatagtgatggggtcgaaatgatctctcttctcggcatgatgttgtggttctcgccg    Adriana

                     1861|__________________________________________________________|1920
XM_814229                TCAGTGCGGGACCGCTTTCTGGACGTGCTTGCCTCCCTGCAGTTTACACCGGAACAACAG    Cl Brener Non-Esmeraldo-like allele
XM_808591                TCAGTGCGGGACCGCTTTCTGGACGTGCTTGCCTCCCTGCAGTTTACACCGGAACAACAG    Cl Brener Esmeraldo-like allele
Adriana_474863           tcagtgcgggaccgctttctggacgtgcttgcctccctgcagtttacaccggaacaacag    Adriana

                     1921|__________________________________________________________|1980
XM_814229                GGTGTCTTCTTCGACTCCATGGAATCAATTGCCCGTTCTTTGCCGTCACATGCCGTGAGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                GGTGTCTTCTTCGACTCCATGGAATCACTTGCCCGTTCTTTGCCATCGCATGCCGTAAGG    Cl Brener Esmeraldo-like allele
Adriana_474863           ggtgtcttcttcgactccatggaatcaattgcccgttctttgtcgccgcatgccgtgagg    Adriana

                     1981|__________________________________________________________|2040
XM_814229                AATCTCCTTATTGTGGACGCGACTGGCACTTTGTTGAATGAAGTGGGTCGGCTGCCGTGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                GATCTCCTTATTGTGGACGCGACTGGTACTGTGTTGAATGAAGTGGGTCGGCTGCCGTGG    Cl Brener Esmeraldo-like allele
Adriana_474863           aatctccttattgtggacgcgactggcactgtgttgaatgaagtgggtcggctgccgtgg    Adriana

                     2041|__________________________________________________________|2100
XM_814229                CAAGGAGAGCAGCTGCAGACGGAATCACTGGAGCGGTTGCTCCTACTGCAGCTGCATCGT    Cl Brener Non-Esmeraldo-like allele
XM_808591                CAAGGAGAGCAGCTGCAGACGGAATCACTGGAGCGGTTGCTCTTACTGCAGCTGCATCGT    Cl Brener Esmeraldo-like allele
Adriana_474863           caaggagagcagctgcagacggaatcactggagcggttgctcctactgcagctgcatcgt    Adriana

                     2101|__________________________________________________________|2160
XM_814229                CAGCGGGAATTGGTGAACCGAGAGAAAGTGGCAGACCGTTTTACTCCTGAAGGTCGGTGG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CAGCGGGAATTGGTGAACCGAGAGAGAGTGGCAGACCGTTTTACTCCTGAAGGTCGGTGG    Cl Brener Esmeraldo-like allele
Adriana_474863           cagcgggaagtggtgaaccgagagaaagtggcagaccgttttactcctgaaggtcggtgg    Adriana

                     2161|__________________________________________________________|2220
XM_814229                ATGTCCGTGCAGCAGCAGCGGTGGAAACTGGGACCGCAGCACGGCTATGCGAGCCGCGTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                GCATCTGTGCAGCAGCAGCGGTGGAAACTGGGACCGCAGCACGGCCATGCGAGCCGCGTG    Cl Brener Esmeraldo-like allele
Adriana_474863           gcgtccgtgcagcggcagcggtggaaactgggaccgcagcacggccatgcgagccgcgtt    Adriana

                     2221|__________________________________________________________|2280
XM_814229                CTTGTGTGCTTCGTCCTGCACCATCTTCGCAATGGTTCCGGGAAGCGGGAAGTGGGTG--    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTTGTGTGCTTCGTCCTGCATCATCTTCGCAATGGTTCCGGGAAGCGGGAATTGGGTGAC    Cl Brener Esmeraldo-like allele
Adriana_474863           cttgtgtgcttcgtcctgcaccatcttcgcaatggttccgggaagcgggaagtgggtg--    Adriana

                     2281|__________________________________________________________|2340
XM_814229                ----ACGACCACGACGACGAAGACGAAGAAGGGGAGGCCGGTGGTGTGTCTGTCTCGCCA    Cl Brener Non-Esmeraldo-like allele
XM_808591                GACCACGACCACGACGACGAAGACGAAGAAGGGGAGGCTGGTGGTGTGTCTGTTTCGCCA    Cl Brener Esmeraldo-like allele
Adriana_474863           ----acgacc---acgaagaagacgaagaaggggaggccggtggtgtgtctgtctcgcca    Adriana

                     2341|__________________________________________________________|2400
XM_814229                ATTCAACCGAGCACCTGCAAAAGCACTGTGGGGCAACGTGTGGGTGGCATCATTGGTGAA    Cl Brener Non-Esmeraldo-like allele
XM_808591                ATTCAACCGAGCACCAGCAAAAGCACTGTGGGGCAACGTGTGGGCGGCATCATTGGCGAA    Cl Brener Esmeraldo-like allele
Adriana_474863           attcaaccgagtacctgcaaaagcactgtggggcaacgtgtggacggcatcattggtgaa    Adriana

                     2401|__________________________________________________________|2460
XM_814229                CCGCAGACGATTCCCCGTTGCGGTGATGAAATCATCCTTCTCAGGCCGCGCTGCACTCTG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CCGCAGACTATTCCCCGTTGCGGTGATGAACCCATCCTTCTCAGGCCGCGCCGCACTCTG    Cl Brener Esmeraldo-like allele
Adriana_474863           ccgcagacgattccccgttgcggtgatgaacccatccttctcagaccgcgccgcactctg    Adriana

                     2461|__________________________________________________________|2520
XM_814229                CCGTTGGGCCGTCAGGCGTCGCGACGTGGAGAGGAAGCGGAGGAAGAAGACGTCGAGGAG    Cl Brener Non-Esmeraldo-like allele
XM_808591                CCGTTGGGCCGTCAGGCGTCGCGAAGTGGAGAGGAAGCGGAGGAAGAAGACGTCGAGGAG    Cl Brener Esmeraldo-like allele
Adriana_474863           ccgttgggccgtcaggcgtcgcgaagtggagaggaagcggaggaagaagacgtcgaggag    Adriana

                     2521|__________________________________________________________|2580
XM_814229                GGAAGCGGATGCCACGAAAGTGCCAGCGACAAGTTGTGGCTGCAACGTGAGCTGGGCAGC    Cl Brener Non-Esmeraldo-like allele
XM_808591                GGAAGTGGATGCCACGAAAGTGCCAGCGACAAGTTGTGGCTGCAACGTGTGCTGGGCAGC    Cl Brener Esmeraldo-like allele
Adriana_474863           ggaagtggatgccacgaaagtgccagcgacaatttgtggctgcaacgtgtgatgggcagc    Adriana

                     2581|__________________________________________________________|2640
XM_814229                CATTCGCCAGACGCTTCACGACCAAAACTACAGCAAACGATGGCAGTGCCGACGCGCATT    Cl Brener Non-Esmeraldo-like allele
XM_808591                CATTCGCCAGACGCTTCTCGACCAAAAGTACAGCAAACGATGGCAGCGCCGACGCGCATG    Cl Brener Esmeraldo-like allele
Adriana_474863           cattcgccagacgcttcacgaccaaaactac-----------------------------    Adriana

                     2641|__________________________________________________________|2700
XM_814229                TCAGCTTCGGTGGCAAGTAGAAACGCAATAGATCCATTAGAACGCGTGCGACAGCGGCAA    Cl Brener Non-Esmeraldo-like allele
XM_808591                TCAGCCTCGGTGGCAAGTAGAAACGCAATGGAGCCATTAGAACGCGTGCGACAGCGGCAA    Cl Brener Esmeraldo-like allele

                     2701|__________________________________________________________|2760
XM_814229                CTAGAGAGTATTGCCACGGAGGAAAAGGCGTACCGGGTGGCCCTGGGGTTGTTTGCATCC    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTAGAATGTATTGCCGCGGAGGAAAAGGCGTACCGGGTGGCCCTGGGGTTGTTTGCATCC    Cl Brener Esmeraldo-like allele

                     2761|__________________________________________________________|2820
XM_814229                CTTGCGTCGCGATACTACCGGCACCTCTTAACACCTCAGGCAGCCTTGGAGTACTTGCAT    Cl Brener Non-Esmeraldo-like allele
XM_808591                CTTGCGTCGCGGTAA---------------------------------------------    Cl Brener Esmeraldo-like allele

                     2821|__________________________________________________________|2880
XM_814229                CGCCAGGAGCACGGGGCACCCCAGCGGAGACACGTAAACCCTGTCCCGCCCACACCGCCG    Cl Brener Non-Esmeraldo-like allele

                     2881|__________________________________________________________|2940
XM_814229                TCCGCGAGAACAGGCGTAAACAACAGCAGCACCACATTGCGTCTATGGACGGCCCGCGAT    Cl Brener Non-Esmeraldo-like allele

                     2941|__________________________________________________________|3000
XM_814229                GTGTGTCGGGAGGACCTCTTCTACTTCTCCCTTCCTCTTAGTGCAATATGTGAGGCAGCC    Cl Brener Non-Esmeraldo-like allele

                     3001|__________________________________________________________|3060
XM_814229                ATAGCCGATCTCGTGGAGCGGTGCAAGAGACACCGGCAGGCGCTGCAAAGAAAATTACGA    Cl Brener Non-Esmeraldo-like allele

                     3061|__________________________________________________________|3120
XM_814229                ACCCTACCGCATTCATCGCGTGGACGTCGTTGGTTCTTGCAGGACGCGGCGACAAATATC    Cl Brener Non-Esmeraldo-like allele

                     3121|__________________________________________________________|3180
XM_814229                ATGGGCCGCCTCATTGCGCTCTTTCAGATTCTCCTGCATCACATCCAGCGCGAAGGAGAG    Cl Brener Non-Esmeraldo-like allele

                     3181|__________________________________________________________|3240
XM_814229                AAAGCAGTGCGGGAGGCAATTGCGCAGATGCCGATTTTGCCTGAAGTTGAGGATGAGGAT    Cl Brener Non-Esmeraldo-like allele

                     3241|__________________________________________________________|3300
XM_814229                TTCGTAAACGATTTGGCTGAGCGATATAATTGCAGGTATCTCACACTGCGGGAATTGCAT    Cl Brener Non-Esmeraldo-like allele

                     3301|__________________________________________________________|3360
XM_814229                GGTGGCACGCTTGTCGAGGTTACGAAGTTCATTGTTCGATGTTTTTCACGTCCTGCGGAT    Cl Brener Non-Esmeraldo-like allele

                     3361|_________________________________________________|3411
XM_814229                CCGGGTGGGGAAGACGCAACGGACTCTTCTTTCCGGCCGCGTATGGACTGA             Cl Brener Non-Esmeraldo-like allele

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