TcSNP alignment 430809

Summary information:

Number of Contained Sequences: 3 | Consensus Length: 575 bp | Assembly Consistency: 97
Assembly notes:

SNPs found: 42
Synonymous: 11   |   Non-synonymous:: 30   |   Nonsense: 0

Sequences in this alignment:
XM_802986   CL Brener   Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.10470535 ...
XM_797109   CL Brener   Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.10470535 ...
32150962   Tulahuen   TcAmaPl04Run01_G08 Trypanosoma cruzi amastigote cDNA library Trypanoso ...

Reference sequences:
Tc00.1047053508833.10  –  Find this gene also at TriTrypDB | GeneDB | TDR Targets | OrthoMCL  –  Search TcSNP for divergent copies of this gene.
Tc00.1047053510437.45  –  Find this gene also at TriTrypDB | GeneDB | TDR Targets | OrthoMCL  –  Search TcSNP for divergent copies of this gene.

Additional information (BLAST).

 

 

Alignment display controls

Only paint SNPs that have a score greater than:   [ Valid range: 0-1 ]
Display alignment from base:    to  [ Valid range: 1-575 ]

 

 

Alignment

Alignment legend: polymorphic sites in the alignment have been decorated using different colors and/or font styles to show different properties of each site.

Property Score Synonymous Nonsynonymous Nonsense Not analyzed
Style used Background color Black White Bold, Underline Italics
Example: 0 score color key 1   A       G     A       G     A       G     A     G  

  NOTE: reference CDSs are shown in UPPERCASE

                    1|__________________________________________________________|60
XM_802986            ATGGAAGTGTGCGTGCTGCCTTGGGCACACGGTGCGCCGTCCCTCGCCGACATTCTCCTG    CL Brener
32150962             -------cggcacgagcaccttgggcacacggtgcgctgttcctcgccggcattctcctg    Tulahuen
XM_797109            ATGGAAGTGTGCGTGCCACCTTGGGCACACGGTGCGCTGTTCCTCGCCGGCATTCTCCTG    CL Brener

                   61|__________________________________________________________|120
XM_802986            CGCGGCGGAGGGAACCGCCTGCGGAGGCAAAGTCGCTGTGCAGAGTTGGCGTTCTTCCTG    CL Brener
32150962             cgcggcggagggagtcgcctgcagaggcaaagtcgctgtgcggagttggcgttcttcctg    Tulahuen
XM_797109            CGCGGCGGAGGGAGTCGCCTGCAGAGGCAAAGTCGCTGTGCGGAGTTGGCGTTCTTCCTG    CL Brener

                  121|__________________________________________________________|180
XM_802986            CTGTGTTTCGAGCTTTGCGGAGTGCGTGCATTGTGGCGTCATTTTTGGCGTCGTGACATT    CL Brener
32150962             ctgtgtttcgagctttgtggcgtgcgtgcattgtggcatcatttttggtgtcgtgacatt    Tulahuen
XM_797109            CTGTGTTTCGAGCTTTGTGGCGTGCGTGCATTGTGGCATCATTTTTGGCGTCGTGACATT    CL Brener

                  181|__________________________________________________________|240
XM_802986            CTCACCGTCGGGGTGCCTGTGCCGGGTGTGGCTGGCCAACACCTC-GGCAATGCCCGGCT    CL Brener
32150962             ctcatcgtgggggtgcttgtgccgggtgtgggtggccagcccccccggcaatgcccggct    Tulahuen
XM_797109            CTCACCGTCGGGGTGCTTGTGCCGGATGTGGGTGGCCAACTCCCC-GGCAATGCCCGGCT    CL Brener

                  241|__________________________________________________________|300
XM_802986            GCTTGCCACGTTAAGGGCATTGAAGGAGTGCCGTAGTCTTTGTTGCCGGCTGCAGCTCTG    CL Brener
32150962             gcttgccacgttaagggcattgaatgagtgccgtggtcttttttgccggctgcagctctg    Tulahuen
XM_797109            GCTTGCCACGTTAAGAGCATTGAAGGAGTGCCGTGGTCTTTTTTGCCGGCTGCAGCTCTG    CL Brener

                  301|__________________________________________________________|360
XM_802986            TTTTGGAGCGTTCGTGTGCGCGTATGTAAGATACTGGACTCGTTTTCGTTTCGGACCTGA    CL Brener
32150962             ttttggggcgttcgtgtgcgcgcatgtaagatactggactcgctttcgtctcggacctga    Tulahuen
XM_797109            TTTTGGGGCGTTCGTGTGCGCGCATGTAAGATACTGGACTCGCTTTCGTTTCGGACCTGA    CL Brener

                  361|__________________________________________________________|420
XM_802986            ATCCACAGGACGTGCATTGGGACGGGATGGATGCAGCAGGATCGCCATATTCCCGGGACG    CL Brener
32150962             atccacaggacgtgcattgggacgggatggatgcagcaggatcgtcatattcccgggacg    Tulahuen
XM_797109            ATCCACAGGACGTGCATTGGGACGGGATGGATGCAGCAGGATCGTCATATTCCCGGGACG    CL Brener

                  421|__________________________________________________________|480
XM_802986            CTTTCTTCTTGACCCGAAGCAGTCGTGCTTGTGGCAGTGTCGGTGA--------------    CL Brener
32150962             ctttcttcttgacccggagcagtcgtgcttgtggcattttcggtgacgaagtctgggtcc    Tulahuen
XM_797109            CTTTCTTCTTGACCCGGAGCAGTCGTGCTTGTGGCAGTGTCGGTGA--------------    CL Brener

                  481|__________________________________________________________|540
32150962             ggcttgttggtcgtacgacgccgtgcggaaacagcataaaagtagcttcggcctgtgctg    Tulahuen

                  541|_________________________________|575
32150962             tgcagtctgtggcggaggtgcggtcggcgtgccgt                             Tulahuen

[+/–] Show/Hide decorated alignment